Genetic Epidemiology - Map + Timeline + Charts + Genetic Tree

Data

Districts ADM2 (.geojson)

Provinces ADM1 (.geojson)

Country ADM0 (.geojson)

Sample Data (.csv or .xlsx)

Days / step

Animation speed

Window (days)

Lifespan (days)

Marker size (px)

Jitter within (m)

Show sample counts

Province labels

Country borders

Country labels

Theme

Genetic distance (.tab)

Genetic similarity table (toggle)

Aggregate by

Area A

Area B

Aggregate by quarter (3 months)

Align axis (rolling 36 months)

x: month (or quarter) | y: samples (cumulative to current date)

Legend

Marker grouping

Use this sheet as a refresher for what each control does.

Control	What it means	Simple explanation
Days / step	How far the clock advances per frame	If set to 7, each tick moves the timeline forward one week.
Animation Speed	Playback speed in milliseconds	Lower values speed up the animation (e.g., 600 ms is faster than 2000 ms).
Window (days)	Size of the rolling window	Shows samples collected within the past X days relative to the slider.
Lifespan (days)	How long dots remain visible	Samples fade out after this many days so you can follow fresh activity.

Control	What it means	Simple explanation
Marker size (px)	Radius of each sample marker	Bigger numbers make the dots easier to spot on the map.
Jitter within (m)	Random scatter distance around collection site (if longitude and latitude supplied)	Prevents overlap by nudging points up to the specified meters away from collection site inside a district.

Option	What it means
Show sample counts	Adds numeric totals over each district for the visible window.
Province labels	Displays ADM1 names on the map.
Country borders	Emphasizes national boundaries.
Country labels	Adds country names for quick orientation.

Control	What it means
Theme	Switch between light and dark styling for the entire workspace.

Built by Varanya Wasakul
under the GenRe-Mekong project.